mysql_upgrade nie powiodło się - tabele innodb nie istnieją?

Jest to znany błąd w MySQL 5.6, jest udokumentowany tutaj .
Zgodnie z odpowiedziami na zgłoszenie błędu możesz ręcznie utworzyć brakujące tabele. Struktura brakujących tabel znajduje się w załączniku tutaj .
Kroki do naśladowania:
Usuń te tabele z Mysql:

innodb_index_statsinnodb_table_statsslave_master_infoslave_relay_log_infoslave_worker_info
Usuń *.frm i *.ibd pliki dla 5 tabel powyżej.
Utwórz tabele, uruchamiając następujące zapytania:
CREATE TABLE `innodb_index_stats` (
  `database_name` varchar(64) COLLATE utf8_bin NOT NULL,
  `table_name` varchar(64) COLLATE utf8_bin NOT NULL,
  `index_name` varchar(64) COLLATE utf8_bin NOT NULL,
  `last_update` timestamp NOT NULL DEFAULT CURRENT_TIMESTAMP ON UPDATE CURRENT_TIMESTAMP,
  `stat_name` varchar(64) COLLATE utf8_bin NOT NULL,
  `stat_value` bigint(20) unsigned NOT NULL,
  `sample_size` bigint(20) unsigned DEFAULT NULL,
  `stat_description` varchar(1024) COLLATE utf8_bin NOT NULL,
  PRIMARY KEY (`database_name`,`table_name`,`index_name`,`stat_name`)
) ENGINE=InnoDB DEFAULT CHARSET=utf8 COLLATE=utf8_bin STATS_PERSISTENT=0;

CREATE TABLE `innodb_table_stats` (
  `database_name` varchar(64) COLLATE utf8_bin NOT NULL,
  `table_name` varchar(64) COLLATE utf8_bin NOT NULL,
  `last_update` timestamp NOT NULL DEFAULT CURRENT_TIMESTAMP ON UPDATE CURRENT_TIMESTAMP,
  `n_rows` bigint(20) unsigned NOT NULL,
  `clustered_index_size` bigint(20) unsigned NOT NULL,
  `sum_of_other_index_sizes` bigint(20) unsigned NOT NULL,
  PRIMARY KEY (`database_name`,`table_name`)
) ENGINE=InnoDB DEFAULT CHARSET=utf8 COLLATE=utf8_bin STATS_PERSISTENT=0;

CREATE TABLE `slave_master_info` (
  `Number_of_lines` int(10) unsigned NOT NULL COMMENT 'Number of lines in the file.',
  `Master_log_name` text CHARACTER SET utf8 COLLATE utf8_bin NOT NULL COMMENT 'The name of the master binary log currently being read from the master.',
  `Master_log_pos` bigint(20) unsigned NOT NULL COMMENT 'The master log position of the last read event.',
  `Host` char(64) CHARACTER SET utf8 COLLATE utf8_bin NOT NULL DEFAULT '' COMMENT 'The host name of the master.',
  `User_name` text CHARACTER SET utf8 COLLATE utf8_bin COMMENT 'The user name used to connect to the master.',
  `User_password` text CHARACTER SET utf8 COLLATE utf8_bin COMMENT 'The password used to connect to the master.',
  `Port` int(10) unsigned NOT NULL COMMENT 'The network port used to connect to the master.',
  `Connect_retry` int(10) unsigned NOT NULL COMMENT 'The period (in seconds) that the slave will wait before trying to reconnect to the master.',
  `Enabled_ssl` tinyint(1) NOT NULL COMMENT 'Indicates whether the server supports SSL connections.',
  `Ssl_ca` text CHARACTER SET utf8 COLLATE utf8_bin COMMENT 'The file used for the Certificate Authority (CA) certificate.',
  `Ssl_capath` text CHARACTER SET utf8 COLLATE utf8_bin COMMENT 'The path to the Certificate Authority (CA) certificates.',
  `Ssl_cert` text CHARACTER SET utf8 COLLATE utf8_bin COMMENT 'The name of the SSL certificate file.',
  `Ssl_cipher` text CHARACTER SET utf8 COLLATE utf8_bin COMMENT 'The name of the cipher in use for the SSL connection.',
  `Ssl_key` text CHARACTER SET utf8 COLLATE utf8_bin COMMENT 'The name of the SSL key file.',
  `Ssl_verify_server_cert` tinyint(1) NOT NULL COMMENT 'Whether to verify the server certificate.',
  `Heartbeat` float NOT NULL,
  `Bind` text CHARACTER SET utf8 COLLATE utf8_bin COMMENT 'Displays which interface is employed when connecting to the MySQL server',
  `Ignored_server_ids` text CHARACTER SET utf8 COLLATE utf8_bin COMMENT 'The number of server IDs to be ignored, followed by the actual server IDs',
  `Uuid` text CHARACTER SET utf8 COLLATE utf8_bin COMMENT 'The master server uuid.',
  `Retry_count` bigint(20) unsigned NOT NULL COMMENT 'Number of reconnect attempts, to the master, before giving up.',
  `Ssl_crl` text CHARACTER SET utf8 COLLATE utf8_bin COMMENT 'The file used for the Certificate Revocation List (CRL)',
  `Ssl_crlpath` text CHARACTER SET utf8 COLLATE utf8_bin COMMENT 'The path used for Certificate Revocation List (CRL) files',
  `Enabled_auto_position` tinyint(1) NOT NULL COMMENT 'Indicates whether GTIDs will be used to retrieve events from the master.',
  PRIMARY KEY (`Host`,`Port`)
) ENGINE=InnoDB DEFAULT CHARSET=utf8 STATS_PERSISTENT=0 COMMENT='Master Information';

CREATE TABLE `slave_relay_log_info` (
  `Number_of_lines` int(10) unsigned NOT NULL COMMENT 'Number of lines in the file or rows in the table. Used to version table definitions.',
  `Relay_log_name` text CHARACTER SET utf8 COLLATE utf8_bin NOT NULL COMMENT 'The name of the current relay log file.',
  `Relay_log_pos` bigint(20) unsigned NOT NULL COMMENT 'The relay log position of the last executed event.',
  `Master_log_name` text CHARACTER SET utf8 COLLATE utf8_bin NOT NULL COMMENT 'The name of the master binary log file from which the events in the relay log file were read.',
  `Master_log_pos` bigint(20) unsigned NOT NULL COMMENT 'The master log position of the last executed event.',
  `Sql_delay` int(11) NOT NULL COMMENT 'The number of seconds that the slave must lag behind the master.',
  `Number_of_workers` int(10) unsigned NOT NULL,
  `Id` int(10) unsigned NOT NULL COMMENT 'Internal Id that uniquely identifies this record.',
  PRIMARY KEY (`Id`)
) ENGINE=InnoDB DEFAULT CHARSET=utf8 STATS_PERSISTENT=0 COMMENT='Relay Log Information';

CREATE TABLE `slave_worker_info` (
  `Id` int(10) unsigned NOT NULL,
  `Relay_log_name` text CHARACTER SET utf8 COLLATE utf8_bin NOT NULL,
  `Relay_log_pos` bigint(20) unsigned NOT NULL,
  `Master_log_name` text CHARACTER SET utf8 COLLATE utf8_bin NOT NULL,
  `Master_log_pos` bigint(20) unsigned NOT NULL,
  `Checkpoint_relay_log_name` text CHARACTER SET utf8 COLLATE utf8_bin NOT NULL,
  `Checkpoint_relay_log_pos` bigint(20) unsigned NOT NULL,
  `Checkpoint_master_log_name` text CHARACTER SET utf8 COLLATE utf8_bin NOT NULL,
  `Checkpoint_master_log_pos` bigint(20) unsigned NOT NULL,
  `Checkpoint_seqno` int(10) unsigned NOT NULL,
  `Checkpoint_group_size` int(10) unsigned NOT NULL,
  `Checkpoint_group_bitmap` blob NOT NULL,
  PRIMARY KEY (`Id`)
) ENGINE=InnoDB DEFAULT CHARSET=utf8 STATS_PERSISTENT=0 COMMENT='Worker Information';
Uruchom ponownie serwer MySQL.
Uruchom mysql_upgrade skrypt.